IEDB Analysis Resource
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MHC-II Binding Predictions
Specify Sequence(s)
Enter protein sequence(s) in FASTA format
Or select file containing sequence(s)
Choose a Prediction Method
Prediction Method
Show all the method versions:
IEDB recommended 2023.05 (NetMHCIIpan 4.1 EL)
IEDB recommended 2.22
IEDB recommended 2.18
Consensus 2.22
Consensus 2.18
NetMHCIIpan 4.1 BA
NetMHCIIpan 4.0 EL
NetMHCIIpan 4.0 BA
NetMHCIIpan 3.2
NetMHCIIpan 3.1
NN-align 2.3 (NetMHCII 2.3)
NN-align 2.2 (NetMHCII 2.2)
SMM-align (NetMHCII 1.1)
Combinatorial library
Sturniolo
Help on prediction method selections
Specify what to make binding predictions for
Select species/locus
Select MHC allele(s)
Select α & β chains separately if applicable:
Select full HLA reference set
:
Select 7-allele HLA reference set:
Allele
Upload allele file
Select length(s)
default
12-18
as is
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
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27
28
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30
Specify Output
Sort peptides by
Position in sequence
Adjusted Rank
Output format
XHTML table
Text file
Email address (optional)