IEDB Analysis Resource - Labs
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Axel-F
A
ntigen e
X
pression based
E
pitope
L
ikelihood-
F
unction
Specify Sequence(s)
Upload CSV or FASTA file.
(Make sure CSV file contains header.)
Peptide Selection
Peptide Column:
Select Column
Break input sequence into peptide length
8
9
10
11
12
13
14
Allele Selection
From CSV
Select Allele
Allele Column:
Select Column
Species :
human
chimpanzee
cow
gorilla
macaque
mouse
pig
dog
horse
Alleles :
Select TPM source
From CSV
TCGA
Manual Input
TPM Column :
Select Column
Select TCGA Cancer Type
ACC : Adrenocortical carcinoma
BLCA : Bladder Urothelial Carcinoma
BRCA : Breast invasive carcinoma
CESC : Cervical squamous cell carcinoma and endocervical adenocarcinoma
CHOL : Cholangiocarcinoma
COAD : Colon adenocarcinoma
DLBC : Lymphoid Neoplasm Diffuse Large B-cell Lymphoma
ESCA : Esophageal carcinoma
FPPP : FFPE Pilot Phase II
GBM : Glioblastoma multiforme
HNSC : Head and Neck squamous cell carcinoma
KICH : Kidney Chromophobe
KIRC : Kidney renal clear cell carcinoma
KIRP : Kidney renal papillary cell carcinoma
LAML : Acute Myeloid Leukemia
LCML : Chronic Myelogenous Leukemia
LGG : Brain Lower Grade Glioma
LIHC : Liver hepatocellular carcinoma
LUAD : Lung adenocarcinoma
LUSC : Lung squamous cell carcinoma
MESO : Mesothelioma
MISC : Miscellaneous
OV : Ovarian serous cystadenocarcinoma
PAAD : Pancreatic adenocarcinoma
PCPG : Pheochromocytoma and Paraganglioma
PRAD : Prostate adenocarcinoma
READ : Rectum adenocarcinoma
SARC : Sarcoma
SKCM : Skin Cutaneous Melanoma
STAD : Stomach adenocarcinoma
TGCT : Testicular Germ Cell Tumors
THCA : Thyroid carcinoma
THYM : Thymoma
UCEC : Uterine Corpus Endometrial Carcinoma
UCS : Uterine Carcinosarcoma
UVM : Uveal Melanoma
Select Gene
Provide TPM value