IEDB Analysis Resource

MHCI Weekly Benchmark results


Overall scores

Overall scores based on data sets submitted to the IEDB within a single week. The overall scores in the SRCC and AUC columns are calculated using performance values for only SRCC or AUC respectively. In the overall column, both evaluation types are used.

Datasets displayed in gray showed poor performance across all of the available predictors and are excluded from the overall ranking, pending further analysis.


Server Overall SRCC AUC
ANN 3.4 42 22 62
ANN 4.0 81 69 93
ARB 26 25 26
DeepSeqPa - - -
IEDB Consensus 59 56 62
NetMHCcons 73 57 90
NetMHCpan 2.8 75 66 83
NetMHCpan 3.0 88 76 100
NetMHCpan 4.0 86 73 100
NetMHCpan 4.1 - - -
PickPocket 29 24 33
SMM 45 43 46
SMMPMBEC 45 43 46
mhcflurry 1.2.0 83 85 82

Data set specific results

Detailed information for the evaluated data sets used in the calculation of the overall scores in the table above. Predictions from each participating server for the data sets listed below may be downloaded here.

IEDB
Reference		 Allele Peptide
Length		 Peptide
Count		 Positive
Count		 Measurement
type		 ANN 3.4 ANN 4.0 ARB DeepSeqPa IEDB Consensus NetMHCcons NetMHCpan 2.8 NetMHCpan 3.0 NetMHCpan 4.0 NetMHCpan 4.1 PickPocket SMM SMMPMBEC mhcflurry 1.2.0
SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC
 1039777   H-2-Db   9   10   3   ic50   0.705   1.000   0.925   1.000   0.772   0.952   -   -   0.860   1.000   0.705   1.000   0.743   1.000   0.821   1.000   0.834   1.000   -   -   0.705   0.905   0.860   1.000   0.860   1.000   0.925   1.000 
 1039777   H-2-Kb   8   14   4   ic50   0.636   0.850   0.666   0.925   0.636   0.900   -   -   0.645   0.850   0.707   0.900   0.705   0.875   0.801   0.950   -   -   -   -   0.549   0.725   0.581   0.825   0.581   0.825   0.778   0.950 
 1039777   H-2-Kb   9   10   2   ic50   0.648   0.938   0.770   1.000   0.442   0.750   -   -   0.733   0.938   0.818   1.000   0.855   1.000   0.830   1.000   0.842   1.000   -   -   0.782   1.000   0.661   0.875   0.661   0.875   0.794   0.938