IEDB Analysis Resource

MHCI Weekly Benchmark results


Overall scores

Overall scores based on data sets submitted to the IEDB within a single week. The overall scores in the SRCC and AUC columns are calculated using performance values for only SRCC or AUC respectively. In the overall column, both evaluation types are used.

Server Overall SRCC AUC
NetMHCpan 2.8 56 58 54
NetMHCpan 3.0 36 43 29
NetMHCpan 4.0 16 9 23
SMM 68 64 73
ANN 3.4 100 100 100
ANN 4.0 55 55 55
ARB 0 0 0
SMMPMBEC 82 82 82
IEDB Consensus 73 82 64
NetMHCcons 88 85 90
PickPocket 24 15 33
mhcflurry 1.2.0 59 64 55

Data set specific results

Detailed information for the evaluated data sets used in the calculation of the overall scores in the table above. Predictions from each participating server for the data sets listed below may be downloaded here

IEDB
Reference
Allele Peptide
Length
Peptide
Count
Positive
Count
Measurement
type
NetMHCpan 2.8 NetMHCpan 3.0 NetMHCpan 4.0 SMM ANN 3.4 ANN 4.0 ARB SMMPMBEC IEDB Consensus NetMHCcons PickPocket mhcflurry 1.2.0
SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC
 1029957   HLA-B*38:01   9   27   11   ic50   0.801   0.960   0.808   0.955   0.794   0.966   0.836   0.989   0.842   1.000   0.819   0.977   0.098   0.653   0.839   0.994   0.839   0.983   0.841   1.000   0.784   0.966   0.798   0.949 
 1029957   HLA-B*39:06   9   33   21   ic50   0.590   0.806   0.554   0.790   0.396   0.710   -   -   -   -   -   -   -   -   -   -   -   -   0.590   0.806   0.542   0.750   0.793   0.925